Published papers

发布时间：2016-09-13 点击次数：次

2016年

1. Suoqin Jin, Fang-Xiang Wu, Xiufen Zou, DOMAIN CONTROL OF NONLINEAR NETWORKED SYSTEMS AND APPLICATIONS TO COMPLEX DISEASE NETWORKS, Discrete and Continuous Dynamical Systems - Series B (DCDS-B), 2016, accepted. (附件下载：DOMAIN CONTROL OF NONLINEAR NETWORKED SYSTEMS.pdf (5.10 MB))

2. Yuanyuan Li, Xiufen Zou. Identifying disease modules and components of viral infections based on multi-layer networks. Sci China Inf Sci, 2016, 59(7): 070102, doi: 10.1007/s11432-016-5580-2 (附件下载：1_Identifying disease modules and components of viral.pdf (1.01 MB))

3. Man Liang, Suoqin Jin, Dingjie Wang, and Xiufen Zou, Optimization of controllability and robustness of complex networks by edge directionality,Eur. Phys. J. B (2016) 89: 186, DOI: 10.1140/epjb/e2016-60845-8 (附件下载：2_Optimization of controllability and robustness of complex.pdf (1.01 MB)

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2015年

1. Yuanyuan Li, Suoqin Jin, Lei Lei, Zishu Pan, Xiufen Zou. Deciphering deterioration mechanisms of complex diseases based on the construction of dynamic networks and systems analysis. Scientific Reports 5, 9283, 2015. DOI:10.1038/srep09283.

附件下载：1Deciphering deterioration mechanisms of complex diseases ba (2.19 MB)，附件下载：1Supplement_Deciphering deterioration mechanisms of complex (3.58 MB)

2. Yuanbin Wang, Jinying Tan, Farrah Sadre-Marand, Jiangguo Liu, Xiufen Zou. Mathematical modeling for intracellular transport and binding of HIV-1 Gag proteins, Mathematical Biosciences, 261, pp.198-205, 2015. DOI:10.1016/j.mbs.2015.01.008.

附件下载：4Mathematical modeling for intracellular transport and bindi (1.01 MB)

3. Xiangyun Xiao, Wei Zhang, Xiufen Zou, A new asynchronous parallel algorithm for inferring large-scale gene regulatory networks, Plos one, 10(3):e0119294. DOI:10.1371/journal.pone.0119294.

附件下载：5Plos one_A new asynchronous parallel algorithm for inferrin (908.41 KB)

4. Wei Zhang, Xiufen Zou. A new method for detecting protein complexes based on the three node cliques, IEEE/ACM Trans Comput Biol Bioinform, Vol. 12, No.4, pp. 879 - 886, 2015 doi:10.1109/TCBB.2014.2386314.

5. Yu Chen, Weicheng Xie, Xiufen Zou, A binary differential evolution algorithm learning from explored solutions, Neurocomputing, 149, 1038–1047, 2015

附件下载：4—Neucomputing——A binary differential evolutionalgorithm lea (444.31 KB)

6. Jinying Tan, Xiufen Zou, Optimal control strategy for abnormal innate immune response, Computational and Mathematical Methods in Medicine, Volume 2015, Article ID 386235, Doi:10.1155/2015/386235, 2015.

附件下载：6—Optimal Control Strategy for Abnormal Innate Immune Respon (3.65 MB)

7. Suoqin Jin, Lili Niu, Gang Wang, Xiufen Zou, Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics, International Journal of Bifurcation and Chaos, Vol. 25, No.7, 1540007, 2015. DOI:10.1142/S0218127415400076. （附件下载：1_2015IJBC_Mathematical Modeling and Nonlinear Dynamical Analysis of Cell Growth in Response to Antibiotics.pdf (431.75 KB)

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8. Wei Zhang, Tianhai Tian, Xiufen Zou, Negative feedback contributes to the stochastic expression of the interferon-βgene in virus-triggered type I interferon signaling pathways, Mathematical Biosciences, 265 (2015) 12–27. （附件下载：7Negative feedback contributes to the stochastic expression of the interferon-β gene in virus-triggered type I interferon signaling pathways.pdf (6.24 MB)

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9. Dingjie Wang, Suoqin Jin, Xiufen Zou, Crosstalk between pathways enhances the controllability of signalling networks, IET Systems Biology,2015, doi: 10.1049/iet-syb.2014.0061. （附件下载：9Crosstalk between pathways enhances the controllability of signaling networks.pdf (671.57 KB)

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10. Dingjie Wang, Suoqin Jin, FANG-XIANG WU, Xiufen Zou, ESTIMATION OF CONTROL ENERGY AND CONTROL STRATEGIES FOR COMPLEX NETWORKS, Advances in Complex Systems, Vol. 18 (2015) 1550018 (23 pages).

附件下载：5ESTIMATION OF CONTROL ENERGY AND CONTROL STRATEGIES FOR COMPLEX NETWORKS.pdf (6.59 MB)

2014年

1. Characterizing and controlling the inflammatory network during influenza A virus infection, Scientific Reports, 2014. (Characterizing and controlling the inflammatory network during influenza A virus infection (2.60 MB)，Supplement (5.60 MB))

2. Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts, information Sciences, 2014 (Runtime analysis of a multi-objective evolutionary algorithm for obtaining finite approximations of Pareto fronts (290.25 KB))

3. Yongkai Li, Ming Yi & Xiufen Zou(*), The linear interplay of intrinsic and extrinsic noises ensures a high accuracy of cell fate selection in budding yeast, Scientific Reports 4 : 5764, 2014

2013年

1. Jinying Tan and Xiufen Zou. Complex dynamical analysis of a coupled network from innate immune responses. International Journal of Bifurcation and Chaos, Vol. 23, No.11, 1350180, 2013 (PDF (2.12 MB))

2. Yongkai Li, Ming Yi, and Xiufen Zou*, Identification of the Molecular Mechanisms for Cell-Fate Selection in Budding Yeast through Mathematical Modeling, Biophysical Journal ,Vol: 104, PP: 2282–2294, 2013 (PDF (1.83 MB)) (Comment to our paper (324.00 KB))

3. Wei Zhang , Xiufen Zou* , Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways Through Mathematical Modeling. IEEE/ACM Trans Comput Biol Bioinform. 2013 Apr 10. (download：Systematic Analysis of the Mechanisms of Virus-Triggered Typ (1.62 MB))

4. Suoqin Jin and Xiufen Zou，Construction of the influenza A virus infection- induced cell-specific inflammatory regulatory network based on mutual information and optimization, BMC Systems Biology, 7:105, 2013. (download：BMC systems biology (1.82 MB))

5．Weicheng Xie, Wei Yu, Xiufen Zou*, Diversity-maintained differential evolution embedded with gradient-based local search, Soft Comput (2013) 17:1511–1535. (download：Diversity-maintained differential evolution embedded with gr (1.92 MB))

6. Weicheng Xie and Xiufen Zou, A triangulation-based hole patching method using differential evolution, Computer-Aided Design, Vol.45, 1651–1664, 2013. (download：CAD (3.23 MB))

2012年

1. Jinying Tan, Ruangang Pan, Lei Qiao, Xiufen Zou*, Zishu Pan, Modeling and Dynamical Analysis of Virus-triggered Innate Immune Signaling Pathways, PLoS ONE 7(10): e48114. doi:10.1371/journal.pone.0048114, 2012. (download：Plos One (1.86 MB))

2. Wei-Cheng Xie, Xiu-Fen Zou*, Jian-Dong Yang, Jie-Bin Yang, Iteration and optimization scheme for the reconstruction of 3D surfaces based on non-uniform rational B-splines, Computer-Aided Design, 44 :1127-1140, 2012. (download：CAD (2.20 MB))

3. Wei Zhang, Xiufen Zou*, Synchronization ability of coupled cell-cycle oscillators in changing environments, BMC Systems Biology, 6(Suppl 1):S13, 2012.(download：BMC systems biology (2.00 MB))

2011年

（1）Yu Chen, Xiufen Zou*, Weicheng Xie. Convergence of multi-objective evolutionary algorithms to a uniformly distributed representation of the Pareto front. Information Sciences, 181, 3336-3355, 2011 (download：Information Sciences (1.43 MB))

(2) Yu Chen , Xiufen Zou* and Jun He. Drift conditions for estimating the first hitting times of evolutionary algorithms', International Journal of Computer Mathematics, 88: 1, 37-50, 2011 (download：IJCM (342.10 KB))

附件下载：1Deciphering deterioration mechanisms of complex diseases ba (2.19 MB)，1Supplement_Deciphering deterioration mechanisms of complex (3.58 MB)）